Sentosa® SQ OncoKey Core

Detect sequence variants in non-small cell lung cancer (NSCLC), colorectal cancer (CRC) and thyroid cancer samples

INTENDED USE

Sentosa SQ OncoKey Core Automated Workflow (CE-IVD)

The Sentosa SQ OncoKey Core Panel is a family of panels consisting of three panels: Sentosa SQ NSCLC PanelSentosa SQ CRC Panel and Sentosa SQ Thyroid Cancer Panel. All panels are next-generation sequencing (NGS)-based in vitro diagnostic tests. These CE-IVD marked tests are automated on the Sentosa workflow.

The Sentosa SQ OncoKey Core Panel is intended to be used on the Sentosa SX101 instrument, in conjunction with the Sentosa SX FFPE II gDNA Kit, Sentosa ST401 and Sentosa SQ301 instruments. On this automated workflow, up to 7 samples can be automatically processed and analysed within 2.5 days.

The Sentosa SQ OncoKey Core Panel is intended to be used as a test to aid the oncologist in clinical decision-making. Results should be used in conjunction with other available laboratory and clinical information and are not intended for use as a stand-alone diagnostic test or disease monitoring.

 

Sentosa SQ OncoKey Core Manual Workflow (RUO)

The Sentosa SQ OncoKey Core Primer Set (96) provides the users a manual solution to test for NSCLC, CRC and thyroid cancer. This test contains the Core Primer pool, OncoKey System Control and barcoded DNA adapters sufficient for up to 16 libraries per run (96 reactions in total). The Sentosa SQ OncoKey Core Primer Set is for research use only (RUO), and not for use in diagnostic procedures.

The Sentosa SQ OncoKey Core Primer Set is designed to be used with the Ion AmpliSeq DNA Library Preparation kits for multiplex targeted libraries from DNA for sequencing on the Sentosa SQ301 instrument or Ion PGM/S5/S5 XL systems, following the manufacturer's instructions for the details of the procedure.

 

TARGET GENES

 

 

Target Genes

NSCLC

Number of

Target Mutations

Amplicon

Locations in Exon(s)

NRAS 19 2, 3, 4
CTNNB1 5 3
PIK3CA 14 11, 22
FGFR3 9 7, 9, 14
KIT 8 11, 13, 17
EGFR 10 18, 19, 20, 21
BRAF 15 11, 15
RET 1 16
PTEN 3 5, 7
KRAS 22 2, 3, 4
TP53 7 4, 6, 7
Total 113  

 

 

Target Genes

CRC

Number of

Target Mutations

Amplicon

Locations in Exon(s)

NRAS 19 2, 3, 4
CTNNB1 5 3
PIK3CA 14 11, 22
FGFR3 9 7, 9, 14
KIT 8 11, 13, 17
EGFR 9 18, 19, 20, 21
BRAF 15 11, 15
RET 1 16
PTEN 3 5, 7
KRAS 22 2, 3, 4
TP53 7 4, 6, 7
Total 112  

 

 

Target Genes

Thyroid

Number of

Target Mutations

Amplicon

Locations in Exon(s)

NRAS 19 2, 3, 4
CTNNB1 5 3
PIK3CA 14 11, 22
FGFR3 9 7, 9, 14
cKIT - -
EGFR 10 18, 19, 20, 21
BRAF 15 11, 15
RET 1 16
PTEN 3 5, 7
KRAS 22 2, 3, 4
TP53 7 4, 6, 7
Total 105  

 

FEATURES AND BENEFITS

Supporting Clinical Decision-Making:

  • Detect 5% variant frequency for mutation
  • Sample input: 10 µm section of FFPE sample with > 10 % tumor content
  • Get accurate clinical interpretation and reporting with Vela Analytics
  • From clinical samples to result in 2.5 days*

Providing Laboratory Efficiency:

  • The OncoKey Core Primer Set can be used on different NGS instruments
  • 16 different barcoded DNA Adapters, each sufficient for six libraries
  • Combine NSCLC, CRC & Thyroid samples in one run
  • Seamless sample traceability and IT connectivity
  • Flexible manual solution or automated workflow with 3 hours of hands-on time available
  • Automated CE-IVD workflow*

*Not available with/applicable for the Oncokey Core Primer Set (RUO)

 

WORKFLOW

SPECIFICATIONS (AUTOMATED WORKFLOW)

Attribute NSCLC CRC Thyroid
Regulatory Status CE-IVD, TGA, HSA
No. of Genes 11 11 10
No. of Amplicons 28 28 25
Target Mutations 113 112 105
Sample Input 10 µm section of FFPE sample with > 10% tumor content
Sample Throughput 7 clinical samples and 1 system control sample
Median Coverage ≥ 1.000X 
Mutation Detection Sensitivity 5% - 10%
Hands on Time ≤ 3 hours
Turn around Time 2.5 days including overnight sample incubation
Pack Size 4x8

PRODUCT FLYERS

Sentosa Oncology Panels Flyer CE-IVD EN

ORDERING INFORMATION

ProductPack SizeItem Number
Sentosa SQ CRC Panel Reagents (4x8) CE-IVD 4x8 300261
Sentosa SQ CRC Panel Reagents (4x8) RUO 4x8 300262
Sentosa SQ NSCLC Panel Reagents (4x8) CE-IVD 4x8 300356
Sentosa SQ NSCLC Panel Reagents (4x8) RUO 4x8 300357
Sentosa SQ OncoKey Core Primer Set (96) RUO 96 300694
Sentosa SQ Oncology Solutions (4x8) CE-IVD 4x8 300336
Sentosa SQ Oncology Solutions (4x8) RUO 4x8 300224
Sentosa SQ Thyroid Cancer Reagents (4x8) RUO 4x8 300382
Sentosa SQ Thyroid Cancer Reagents (CE-IVD) 4x8 300381
VELA Analytics Software 480175

For availability in your country, please contact your Vela Diagnostics sales representative. Availability is subject to country's regulatory approval.

For more product related documents, please contact us. 

DOWNLOADS



User Manual
300357 / 300224 Sentosa SQ NSCLC Panel (4x8) (RUO) V2.2
300356 / 300336 Sentosa SQ NSCLC Panel (4x8) (CE-IVD) V2.2
300262 / 300224 Sentosa SQ CRC Panel (4x8) (RUO) V2.0
300261 / 300336 Sentosa SQ CRC Panel (4x8) (CE-IVD) V2.0
300381 / 300336 Sentosa SQ Thyroid Cancer Panel (4x8) (CE-IVD) V2.0
300382 / 300224 Sentosa SQ Thyroid Cancer Panel (4x8) (RUO) V2.0
300694 Sentosa SQ OncoKey Core Primer Set (96) (RUO) V1.0
480175 VELA Analytics Software (RUO) V2.0
300356 / 300336 Sentosa SQ NSCLC Panel (4x8) (CE-IVD) V2.1


MSDS
300336 Sentosa SQ Oncology Solutions (4x8) (CE-IVD) V3.0
300224 Sentosa SQ Oncology Solutions (4x8) (RUO) V3.0
300357 Sentosa SQ NSCLC Panel Reagents (4x8) (RUO) V2.0
300356 Sentosa SQ NSCLC Panel Reagents (4x8) (CE-IVD) V2.0
300262 Sentosa SQ CRC Panel Reagents (4x8) (RUO) V1.0
300261 Sentosa SQ CRC Panel Reagents (4x8) (CE-IVD) V1.0
300381 Sentosa SQ Thyroid Cancer Reagents (4x8) (CE-IVD) V1.0
300694 Sentosa SQ OncoKey Core Primer Set (96) (RUO) V1.0


Product Info
300336 Sentosa SQ Oncology Solutions (4x8) (CE-IVD) V2.2
300224 Sentosa SQ Oncology Solutions (4x8) (RUO) V2.2
300357 Sentosa SQ NSCLC Panel Reagents (4x8) (RUO) V1.2
300356 Sentosa SQ NSCLC Panel Reagents (4x8) (CE-IVD) V1.2
300262 Sentosa SQ CRC Panel Reagents (4x8) (RUO) V1.1
300261 Sentosa SQ CRC Panel Reagents (4x8) (CE-IVD) V1.1
300381 Sentosa SQ Thyroid Cancer Reagents (4x8) (CE-IVD) V1.1
300382 Sentosa SQ Thyroid Cancer Reagents (4x8) (RUO) V1.1
300694 Sentosa SQ OncoKey Core Primer Set (96) (RUO) V1.1